STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI27469.1L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (369 aa)    
Predicted Functional Partners:
SHI27474.1
iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.746
SHI27478.1
iron(III) transport system substrate-binding protein.
       0.746
SHI27482.1
iron(III) transport system permease protein.
       0.741
SHI27465.1
L-alanine-DL-glutamate epimerase.
 
    
0.733
SHH22319.1
L-alanine-DL-glutamate epimerase.
  
  
 
0.677
SHH11360.1
L-rhamnonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
  
 
0.676
SHI27487.1
GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex.
       0.665
SHI17388.1
5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
    
 0.643
SHH75057.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 
0.439
SHG68093.1
Galactonate dehydratase.
  
  
0.434
Your Current Organism:
Candidimonas bauzanensis
NCBI taxonomy Id: 658167
Other names: Alcaligenaceae bacterium BZ59, C. bauzanensis, CGMCC 1.10190, Candidimonas bauzanensis Zhang et al. 2012, DSM 22805, LMG 26046, LMG:26046, strain BZ59
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