STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI27607.13-hydroxyisobutyrate dehydrogenase. (300 aa)    
Predicted Functional Partners:
SHI27613.1
4-carboxymuconolactone decarboxylase.
 
 
  0.665
SHI27600.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
       0.620
SHH82955.1
Glycerate kinase; Belongs to the glycerate kinase type-1 family.
  
 
  0.535
SHG92466.1
FAD/FMN-containing dehydrogenase.
    
  0.501
SHH23443.1
Fe-S oxidoreductase.
    
  0.501
SHH54715.1
Acetyltransferase.
    
  0.497
SHH36619.1
Short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 
 0.486
SHH68571.1
3-hydroxyacyl-CoA dehydrogenase.
   
 
 0.486
SHI45154.1
Short chain enoyl-CoA hydratase.
   
 
 0.486
SHI27595.1
Protein of unknown function.
       0.440
Your Current Organism:
Candidimonas bauzanensis
NCBI taxonomy Id: 658167
Other names: Alcaligenaceae bacterium BZ59, C. bauzanensis, CGMCC 1.10190, Candidimonas bauzanensis Zhang et al. 2012, DSM 22805, LMG 26046, LMG:26046, strain BZ59
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