STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI55153.1Phage-related protein. (112 aa)    
Predicted Functional Partners:
SHI55194.1
Predicted DNA-binding protein, contains XRE-type HTH domain.
 
  
 0.963
SHG77500.1
Helix-turn-helix.
 
 
 0.851
SHH11121.1
Predicted DNA-binding protein, contains XRE-type HTH domain.
 
  
 0.803
SHG74729.1
Predicted DNA-binding protein, contains XRE-type HTH domain.
 
  
 0.790
SHH22442.1
Putative transcriptional regulator.
  
     0.626
SHI55111.1
Hypothetical protein.
       0.489
SHH95902.1
Hypothetical protein.
  
     0.464
SHH11028.1
Probable addiction module antidote protein.
  
     0.462
SHI55245.1
BrnA antitoxin of type II toxin-antitoxin system.
       0.401
SHH74113.1
Conserved hypothetical protein.
  
     0.400
Your Current Organism:
Candidimonas bauzanensis
NCBI taxonomy Id: 658167
Other names: Alcaligenaceae bacterium BZ59, C. bauzanensis, CGMCC 1.10190, Candidimonas bauzanensis Zhang et al. 2012, DSM 22805, LMG 26046, LMG:26046, strain BZ59
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.