STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKC_00545Probable transcriptional regulator protein, LuxR family; COG2771 DNA-binding HTH domain-containing proteins. (246 aa)    
Predicted Functional Partners:
CKC_00540
Transcriptional regulator protein; COG2771 DNA-binding HTH domain-containing proteins.
 
 
 0.944
CKC_04265
Chemotaxis sensory transducer.
  
   
 0.805
CKC_02665
Chemotaxis protein.
  
     0.707
CKC_00165
Hypothetical protein.
  
     0.701
CKC_03625
Von Willebrand factor type A; COG4961 Flp pilus assembly protein TadG.
  
    0.676
CKC_00520
COG1868 Flagellar motor switch protein.
  
     0.663
CKC_02995
COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
  
    0.579
gloB
Glyoxalase II; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
    
   0.570
CKC_00855
Hypothetical protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
    
   0.570
CKC_05440
COG2267 Lysophospholipase.
  
     0.498
Your Current Organism:
Liberibacter solanacearum
NCBI taxonomy Id: 658172
Other names: C. Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum str. CLso-ZC1, Candidatus Liberibacter solanacearum strain CLso-ZC1
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