STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKC_00705COG4964 Flp pilus assembly protein, secretin CpaC; Belongs to the bacterial secretin family. (471 aa)    
Predicted Functional Partners:
CKC_00710
COG3745 Flp pilus assembly protein CpaB.
 
  
 0.992
CKC_00690
Component of type IV pilus; COG4962 Flp pilus assembly protein, ATPase CpaF.
  
 0.972
CKC_00695
Response regulator receiver protein; COG0784 FOG: CheY-like receiver.
 
  
 0.968
CKC_00680
COG2064 Flp pilus assembly protein TadC.
 
  
 0.964
CKC_00685
COG4965 Flp pilus assembly protein TadB.
 
  
 0.957
CKC_00715
Peptidase A24A prepilin type IV; COG4960 Flp pilus assembly protein, protease CpaA.
 
  
 0.922
CKC_00700
Hypothetical protein.
 
     0.889
CKC_00080
Hypothetical protein.
 
    0.617
CKC_00210
TPR repeat-containing protein; COG0457 FOG: TPR repeat.
 
  
 0.617
CKC_04735
Hypothetical protein.
  
     0.502
Your Current Organism:
Liberibacter solanacearum
NCBI taxonomy Id: 658172
Other names: C. Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum str. CLso-ZC1, Candidatus Liberibacter solanacearum strain CLso-ZC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.