STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKC_00845COG4123 Predicted O-methyltransferase; Belongs to the methyltransferase superfamily. (262 aa)    
Predicted Functional Partners:
CKC_00840
Octaprenyl-diphosphate synthase protein; COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
       0.546
CKC_02220
Putative permease protein; COG0795 Predicted permeases.
 
     0.532
CKC_04190
COG1564 Thiamine pyrophosphokinase.
  
     0.505
glyQ
COG0752 Glycyl-tRNA synthetase, alpha subunit.
       0.469
CKC_00165
Hypothetical protein.
  
     0.460
CKC_02960
DNA polymerase III subunit delta; COG0470 ATPase involved in DNA replication.
 
    0.446
CKC_02665
Chemotaxis protein.
  
     0.421
Your Current Organism:
Liberibacter solanacearum
NCBI taxonomy Id: 658172
Other names: C. Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum str. CLso-ZC1, Candidatus Liberibacter solanacearum strain CLso-ZC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.