Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CKC_01075COG3617 Prophage antirepressor. (263 aa)    
Predicted Functional Partners:
CKC_01095
SNF2 related protein; COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
     
 0.844
CKC_01090
VRR-NUC domain-containing protein.
     
 0.843
CKC_01080
Hypothetical protein.
       0.783
CKC_01085
Putative DNA polymerase from bacteriophage origin; COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains.
       0.751
CKC_01100
COG0272 NAD-dependent DNA ligase (contains BRCT domain type II).
       0.732
CKC_01105
COG0194 Guanylate kinase.
       0.732
CKC_01110
Hypothetical protein.
       0.702
CKC_01115
Hypothetical protein.
       0.702
CKC_01070
Anti-repressor protein; COG3646 Uncharacterized phage-encoded protein.
       0.655
CKC_01065
Hypothetical protein; COG2887 RecB family exonuclease.
       0.616
Your Current Organism:
Liberibacter solanacearum
NCBI taxonomy Id: 658172
Other names: C. Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum str. CLso-ZC1, Candidatus Liberibacter solanacearum strain CLso-ZC1
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