STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKC_01480Double-strand break repair helicase AddA; COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); Belongs to the helicase family. UvrD subfamily. (1179 aa)    
Predicted Functional Partners:
CKC_01485
Double-strand break repair protein AddB; COG3893 Inactivated superfamily I helicase.
 
   
 0.963
CKC_01490
Hypothetical protein; COG0802 Predicted ATPase or kinase.
 
   
 0.816
CKC_01495
Two-component sensor histidine kinase protein; COG0642 Signal transduction histidine kinase.
 
    0.816
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
   
 0.665
CKC_01445
COG4395 Uncharacterized protein conserved in bacteria.
  
     0.640
CKC_01475
Thioredoxin; COG0526 Thiol-disulfide isomerase and thioredoxins; Belongs to the thioredoxin family.
  
    0.626
CKC_05460
DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI).
     
 0.590
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.590
recA
Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.562
CKC_03565
COG3750 Uncharacterized protein conserved in bacteria; Belongs to the UPF0335 family.
  
     0.545
Your Current Organism:
Liberibacter solanacearum
NCBI taxonomy Id: 658172
Other names: C. Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum str. CLso-ZC1, Candidatus Liberibacter solanacearum strain CLso-ZC1
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