Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CKC_00545 | CKC_01765 | Probable transcriptional regulator protein, LuxR family; COG2771 DNA-binding HTH domain-containing proteins. | Hypothetical protein. | 0.442 |
CKC_00545 | CKC_01950 | Probable transcriptional regulator protein, LuxR family; COG2771 DNA-binding HTH domain-containing proteins. | Putative ferredoxin protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.474 |
CKC_01765 | CKC_00545 | Hypothetical protein. | Probable transcriptional regulator protein, LuxR family; COG2771 DNA-binding HTH domain-containing proteins. | 0.442 |
CKC_01765 | CKC_01950 | Hypothetical protein. | Putative ferredoxin protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.442 |
CKC_01950 | CKC_00545 | Putative ferredoxin protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | Probable transcriptional regulator protein, LuxR family; COG2771 DNA-binding HTH domain-containing proteins. | 0.474 |
CKC_01950 | CKC_01765 | Putative ferredoxin protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | Hypothetical protein. | 0.442 |