STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKC_02255Type I secretion membrane fusion protein, HlyD; COG0845 Membrane-fusion protein. (441 aa)    
Predicted Functional Partners:
CKC_02260
COG4618 ABC-type protease/lipase transport system, ATPase and permease components.
 
  
 0.957
CKC_04480
Nodulation protein (outer membrane efflux protein); COG1538 Outer membrane protein.
  
 
 0.954
CKC_04335
Probable multidrug resistance transporter protein; COG0477 Permeases of the major facilitator superfamily.
  
 
 0.605
CKC_04795
Lipoprotein-releasing system ATP-binding protein lolD; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
 
 0.603
CKC_01760
Two-component sensor histidine kinase/response regulator hybrid protein; COG0642 Signal transduction histidine kinase.
 
  
 0.592
CKC_04540
COG0463 Glycosyltransferases involved in cell wall biogenesis.
     
 0.583
CKC_01630
Sensory box/GGDEF family protein; COG2199 FOG: GGDEF domain.
  
  
 0.522
CKC_02265
Serralysin; COG2931 RTX toxins and related Ca2+-binding proteins.
 
  
 0.522
secF
Bifunctional preprotein translocase subunit SecD/SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
     
 0.498
CKC_00230
ABC transporter nucleotide binding/ATPase protein; COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
      
 0.446
Your Current Organism:
Liberibacter solanacearum
NCBI taxonomy Id: 658172
Other names: C. Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum str. CLso-ZC1, Candidatus Liberibacter solanacearum strain CLso-ZC1
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