Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CKC_02255Type I secretion membrane fusion protein, HlyD; COG0845 Membrane-fusion protein. (441 aa)    
Predicted Functional Partners:
CKC_02260
COG4618 ABC-type protease/lipase transport system, ATPase and permease components.
 
  
 0.973
CKC_04480
Nodulation protein (outer membrane efflux protein); COG1538 Outer membrane protein.
  
 
 0.926
CKC_01760
Two-component sensor histidine kinase/response regulator hybrid protein; COG0642 Signal transduction histidine kinase.
 
  
 0.588
CKC_04335
Probable multidrug resistance transporter protein; COG0477 Permeases of the major facilitator superfamily.
  
 
 0.579
CKC_02265
Serralysin; COG2931 RTX toxins and related Ca2+-binding proteins.
 
  
 0.577
CKC_04540
COG0463 Glycosyltransferases involved in cell wall biogenesis.
     
 0.518
CKC_02150
GTP cyclohydrolase II protein (riboflavin biosynthesis); Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate. Belongs to the DHBP synthase family.
     
 0.510
secF
Bifunctional preprotein translocase subunit SecD/SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
     
 0.510
CKC_01630
Sensory box/GGDEF family protein; COG2199 FOG: GGDEF domain.
     
 0.496
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.447
Your Current Organism:
Liberibacter solanacearum
NCBI taxonomy Id: 658172
Other names: C. Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum str. CLso-ZC1, Candidatus Liberibacter solanacearum strain CLso-ZC1
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