STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKC_02565Outer membrane protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane. (344 aa)    
Predicted Functional Partners:
CKC_05660
Translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
    
 
 0.760
CKC_00575
COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
    
 
 0.657
CKC_01630
Sensory box/GGDEF family protein; COG2199 FOG: GGDEF domain.
   
 
 0.529
CKC_01825
Hypothetical protein; COG0457 FOG: TPR repeat.
      
 0.465
CKC_01195
Surface antigen (D15); COG4775 Outer membrane protein/protective antigen OMA87.
    
 
 0.461
CKC_00240
Outer membrane protein; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
   
 
 0.404
CKC_03575
Hypothetical protein.
   
 
 0.404
Your Current Organism:
Liberibacter solanacearum
NCBI taxonomy Id: 658172
Other names: C. Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum str. CLso-ZC1, Candidatus Liberibacter solanacearum strain CLso-ZC1
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