STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKC_03230Cysteine desulfurase activator complex subunit SufB; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component. (489 aa)    
Predicted Functional Partners:
CKC_03235
ABC transporter, nucleotide binding/ATPase protein; COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
 
 0.999
CKC_03240
Putative iron-sulfur cluster assembly protein.
  
 
 0.982
CKC_03245
Putative iron-sulfur cluster assembly protein; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 
0.979
CKC_03270
Putative aminotransferase involved in iron-sulfur cluster biogenesis; COG0520 Selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.884
CKC_03280
FeS assembly scaffold SufA; Belongs to the HesB/IscA family.
  
 
 0.681
CKC_03285
COG2166 SufE protein probably involved in Fe-S center assembly.
 
 
 0.679
CKC_05515
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
  
 
 0.545
CKC_03410
Putative pyridoxal-phosphate-dependent aminotransferase protein; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
  
  
 0.484
recA
Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
      
 0.458
CKC_03275
Hypothetical protein; COG2151 Predicted metal-sulfur cluster biosynthetic enzyme.
 
   
 0.446
Your Current Organism:
Liberibacter solanacearum
NCBI taxonomy Id: 658172
Other names: C. Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum str. CLso-ZC1, Candidatus Liberibacter solanacearum strain CLso-ZC1
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