STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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CKC_03410Putative pyridoxal-phosphate-dependent aminotransferase protein; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes. (382 aa)    
Predicted Functional Partners:
CKC_03280
FeS assembly scaffold SufA; Belongs to the HesB/IscA family.
  
 
 0.922
rirA
COG1959 Predicted transcriptional regulator.
  
  
 0.901
CKC_01860
Nitrogen fixation protein; COG0694 Thioredoxin-like proteins and domains.
 
 
 0.834
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
 
 0.821
CKC_05515
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
  
 
 0.795
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.766
CKC_03270
Putative aminotransferase involved in iron-sulfur cluster biogenesis; COG0520 Selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 
0.712
mnmA
tRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
 
  
 0.662
CKC_03405
Hypothetical protein; COG2945 Predicted hydrolase of the alpha/beta superfamily.
       0.616
clpP
ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
  
   0.543
Your Current Organism:
Liberibacter solanacearum
NCBI taxonomy Id: 658172
Other names: C. Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum str. CLso-ZC1, Candidatus Liberibacter solanacearum strain CLso-ZC1
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