STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKC_04475COG3827 Uncharacterized protein conserved in bacteria. (231 aa)    
Predicted Functional Partners:
CKC_01390
Chromosome partitioning protein B; COG1475 Predicted transcriptional regulators; Belongs to the ParB family.
    
 
 0.764
CKC_02940
Hypothetical protein.
  
     0.743
CKC_01785
Bacteriophage repressor protein C1; COG1158 Transcription termination factor; Belongs to the peptidase S24 family.
  
     0.661
CKC_00715
Peptidase A24A prepilin type IV; COG4960 Flp pilus assembly protein, protease CpaA.
  
     0.655
CKC_00080
Hypothetical protein.
  
     0.639
CKC_02065
Hypothetical protein.
  
     0.627
CKC_00010
COG2861 Uncharacterized protein conserved in bacteria.
  
     0.615
CKC_01275
Transcription regulator protein.
  
     0.600
CKC_00110
Hypothetical protein.
  
     0.591
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.573
Your Current Organism:
Liberibacter solanacearum
NCBI taxonomy Id: 658172
Other names: C. Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum str. CLso-ZC1, Candidatus Liberibacter solanacearum strain CLso-ZC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.