Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CKC_04480Nodulation protein (outer membrane efflux protein); COG1538 Outer membrane protein. (452 aa)    
Predicted Functional Partners:
CKC_02255
Type I secretion membrane fusion protein, HlyD; COG0845 Membrane-fusion protein.
  
 
 0.926
secF
Bifunctional preprotein translocase subunit SecD/SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
   
 0.580
CKC_04795
Lipoprotein-releasing system ATP-binding protein lolD; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
   
 
 0.542
CKC_01630
Sensory box/GGDEF family protein; COG2199 FOG: GGDEF domain.
     
 0.513
CKC_01760
Two-component sensor histidine kinase/response regulator hybrid protein; COG0642 Signal transduction histidine kinase.
     
 0.491
guaB
Inosine 5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
     
 0.469
CKC_01195
Surface antigen (D15); COG4775 Outer membrane protein/protective antigen OMA87.
 
   
 0.462
CKC_04335
Probable multidrug resistance transporter protein; COG0477 Permeases of the major facilitator superfamily.
   
 
 0.453
CKC_01965
COG5002 Signal transduction histidine kinase.
      
 0.449
CKC_04360
Two-component sensor histidine kinase protein; COG0642 Signal transduction histidine kinase.
      
 0.449
Your Current Organism:
Liberibacter solanacearum
NCBI taxonomy Id: 658172
Other names: C. Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum str. CLso-ZC1, Candidatus Liberibacter solanacearum strain CLso-ZC1
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