STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKC_04625COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain. (342 aa)    
Predicted Functional Partners:
CKC_04630
ABC transporter membrane spanning protein (amino acid); COG4597 ABC-type amino acid transport system, permease component.
 
 
 0.995
CKC_04635
COG0765 ABC-type amino acid transport system, permease component.
 
 0.993
CKC_04640
ABC transporter related protein; COG1126 ABC-type polar amino acid transport system, ATPase component.
 
 0.982
CKC_01760
Two-component sensor histidine kinase/response regulator hybrid protein; COG0642 Signal transduction histidine kinase.
  
 
 0.608
CKC_01630
Sensory box/GGDEF family protein; COG2199 FOG: GGDEF domain.
     
 0.596
CKC_03670
COG0765 ABC-type amino acid transport system, permease component.
  
 
 0.421
Your Current Organism:
Liberibacter solanacearum
NCBI taxonomy Id: 658172
Other names: C. Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum str. CLso-ZC1, Candidatus Liberibacter solanacearum strain CLso-ZC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.