STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKC_04640ABC transporter related protein; COG1126 ABC-type polar amino acid transport system, ATPase component. (256 aa)    
Predicted Functional Partners:
CKC_04635
COG0765 ABC-type amino acid transport system, permease component.
 0.999
CKC_04630
ABC transporter membrane spanning protein (amino acid); COG4597 ABC-type amino acid transport system, permease component.
 
 
 0.991
CKC_03670
COG0765 ABC-type amino acid transport system, permease component.
 
 0.988
CKC_04625
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 0.973
CKC_03665
Putative amino acid-binding periplasmic ABC transporter protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.811
argG
COG0137 Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.556
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
      
 0.470
CKC_05090
Lipid A ABC exporter family, fused ATPase and inner membrane subunits; COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
     
0.446
CKC_05460
DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI).
     
 0.431
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.431
Your Current Organism:
Liberibacter solanacearum
NCBI taxonomy Id: 658172
Other names: C. Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum str. CLso-ZC1, Candidatus Liberibacter solanacearum strain CLso-ZC1
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