Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CKC_04720Hypothetical protein. (215 aa)    
Predicted Functional Partners:
CKC_04710
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
 0.990
CKC_01760
Two-component sensor histidine kinase/response regulator hybrid protein; COG0642 Signal transduction histidine kinase.
  
 0.941
CKC_02580
Response regulator receiver protein; COG0784 FOG: CheY-like receiver.
   
 0.924
CKC_02675
Putative transcription regulator protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
 
 0.825
CKC_04695
Hypothetical protein.
  
    0.677
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.656
CKC_01925
Hypothetical protein; COG0457 FOG: TPR repeat.
  
     0.647
CKC_04715
Probable two-component response regulator protein; COG0784 FOG: CheY-like receiver.
 
     0.623
CKC_02120
COG1495 Disulfide bond formation protein DsbB.
  
     0.592
CKC_00220
COG0625 Glutathione S-transferase.
  
     0.561
Your Current Organism:
Liberibacter solanacearum
NCBI taxonomy Id: 658172
Other names: C. Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum str. CLso-ZC1, Candidatus Liberibacter solanacearum strain CLso-ZC1
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