STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKC_04770Hypothetical protein. (208 aa)    
Predicted Functional Partners:
CKC_00120
Methyltransferase type 11; COG0500 SAM-dependent methyltransferases.
  
     0.588
CKC_04775
Protoporphyrinogen oxidase (methyltransferase) protein; COG2890 Methylase of polypeptide chain release factors.
       0.527
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
       0.527
CKC_02225
Permease protein.
  
     0.521
CKC_01855
Hypothetical protein.
  
     0.517
CKC_01900
COG1396 Predicted transcriptional regulators.
  
     0.509
clpB
ATP-dependent Clp protease, ATP-binding subunit protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.
       0.499
CKC_03005
Hypothetical protein.
  
     0.447
CKC_04605
Hypothetical protein.
  
     0.425
CKC_03775
COG3814 Uncharacterized protein conserved in bacteria.
  
     0.421
Your Current Organism:
Liberibacter solanacearum
NCBI taxonomy Id: 658172
Other names: C. Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum str. CLso-ZC1, Candidatus Liberibacter solanacearum strain CLso-ZC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.