Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CKC_05960VRR-NUC domain-containing protein. (101 aa)    
Predicted Functional Partners:
CKC_05955
Putative DNA polymerase from bacteriophage origin; COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains.
 
     0.946
CKC_05965
SNF2 related protein; COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
 
     0.946
CKC_05950
Hypothetical protein.
 
     0.881
CKC_05935
Hypothetical protein.
 
     0.836
CKC_01065
Hypothetical protein; COG2887 RecB family exonuclease.
 
     0.776
CKC_01085
Putative DNA polymerase from bacteriophage origin; COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains.
 
     0.775
CKC_01095
SNF2 related protein; COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
 
     0.773
CKC_05970
COG0272 NAD-dependent DNA ligase (contains BRCT domain type II).
       0.773
CKC_05975
COG0194 Guanylate kinase.
       0.773
CKC_01080
Hypothetical protein.
 
     0.766
Your Current Organism:
Liberibacter solanacearum
NCBI taxonomy Id: 658172
Other names: C. Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum CLso-ZC1, Candidatus Liberibacter solanacearum str. CLso-ZC1, Candidatus Liberibacter solanacearum strain CLso-ZC1
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