Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LDG_5139Hypothetical protein. (397 aa)    
Predicted Functional Partners:
apaH
Hypothetical protein; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.636
LDG_5137
Tryptophan/tyrosine permease.
 
    
0.630
LDG_5136
Hypothetical protein.
       0.623
LDG_8481
IcmO (DotL).
  
     0.614
LDG_8191
Hypothetical protein.
  
     0.587
LDG_5138
Hypothetical protein.
       0.576
LDG_8485
Hypothetical protein.
  
     0.572
LDG_6928
Hypothetical protein.
  
     0.567
LDG_5967
Hypothetical protein.
  
     0.562
LDG_8200
Hypothetical protein.
  
 
   0.552
Your Current Organism:
Legionella drancourtii
NCBI taxonomy Id: 658187
Other names: L. drancourtii LLAP12, Legionella drancourtii LLAP12, Legionella drancourtii str. LLAP12, Legionella drancourtii strain LLAP12
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