Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LDG_8541Hypothetical protein. (54 aa)    
Predicted Functional Partners:
LDG_8542
Hypothetical protein.
 
     0.745
LDG_5202
Hypothetical protein.
  
     0.710
folD
Methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
    
 0.687
LDG_8868
Hypothetical protein.
 
     0.678
LDG_6015
Hypothetical protein.
  
     0.643
LDG_5363
6-pyruvoyl tetrahydropterin synthase.
  
     0.640
LDG_8645
Hypothetical protein.
  
     0.613
LDG_5324
Hypothetical protein.
  
  
 0.593
LDG_5446
Hypothetical protein.
  
     0.552
LDG_6429
Hypothetical protein.
  
     0.526
Your Current Organism:
Legionella drancourtii
NCBI taxonomy Id: 658187
Other names: L. drancourtii LLAP12, Legionella drancourtii LLAP12, Legionella drancourtii str. LLAP12, Legionella drancourtii strain LLAP12
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