Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LDG_9069Aminotransferase. (396 aa)    
Predicted Functional Partners:
LDG_7846
Hypothetical protein.
    
 0.941
LDG_6298
Bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.865
LDG_6304
Hypothetical protein.
  
 
 0.865
LDG_5633
Hypothetical protein; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
 0.860
LDG_9067
single-stranded-DNA-specific exonuclease RecJ.
       0.839
LDG_9068
Hypothetical protein.
       0.839
LDG_8804
Hypothetical protein.
  
 0.820
LDG_8802
Hypothetical protein.
  
 
 0.780
LDG_6785
Hypothetical protein.
   
 0.752
LDG_9070
Hypothetical protein.
       0.747
Your Current Organism:
Legionella drancourtii
NCBI taxonomy Id: 658187
Other names: L. drancourtii LLAP12, Legionella drancourtii LLAP12, Legionella drancourtii str. LLAP12, Legionella drancourtii strain LLAP12
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