STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C1645_779290Uncharacterized protein. (247 aa)    
Predicted Functional Partners:
C1645_755550
DNA polymerase alpha/epsilon subunit B-domain-containing protein.
    
 0.630
C1645_761897
ERCC4 domain-containing protein.
    
 0.618
C1645_766249
SMN domain-containing protein.
    
 0.614
C1645_178898
P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.
    
  0.590
C1645_699177
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.566
C1645_729859
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.565
C1645_797939
Putative membrane-associated protein.
    
  0.562
C1645_796494
ERCC4 domain-containing protein.
    
 0.545
C1645_749092
Small nuclear ribonucleoprotein G.
    
  0.539
C1645_435480
Small nuclear ribonucleoprotein Sm D2.
    
 0.537
Your Current Organism:
Glomus cerebriforme
NCBI taxonomy Id: 658196
Other names: ADW 16899, G. cerebriforme
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