STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C1645_301686P-loop containing nucleoside triphosphate hydrolase protein. (671 aa)    
Predicted Functional Partners:
C1645_813184
Coproporphyrinogen III oxidase.
    
   0.884
C1645_787226
P-loop containing nucleoside triphosphate hydrolase protein.
    
 
 0.873
C1645_822311
DNA polymerase family A-domain-containing protein.
   
 
 0.873
C1645_833466
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.
   
 
 0.870
C1645_772495
AA_TRNA_LIGASE_II domain-containing protein.
     
 0.778
C1645_807336
DNA polymerase family A-domain-containing protein.
   
 
 0.775
C1645_330828
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
     
  0.727
C1645_772773
Phosphatidylinositol 3-kinase VPS34.
     
  0.727
C1645_797198
Protein-tyrosine phosphatase-like protein.
     
  0.727
C1645_736209
Endonuclease/exonuclease/phosphatase.
     
  0.727
Your Current Organism:
Glomus cerebriforme
NCBI taxonomy Id: 658196
Other names: ADW 16899, G. cerebriforme
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