STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C1645_825511SAS4 domain-containing protein. (465 aa)    
Predicted Functional Partners:
C1645_701108
Pseudouridine synthase.
   
 
 0.950
C1645_763068
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 
 0.836
C1645_709433
Nucleolar RNA-binding protein.
   
 
 0.812
C1645_781332
Pseudouridine synthase.
   
 
 0.773
C1645_735176
Uncharacterized protein.
    
   0.687
C1645_685715
SHQ1 protein.
   
 
 0.628
C1645_734836
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 
 0.613
C1645_714204
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 
 0.590
C1645_758536
Uncharacterized protein.
   
 
 0.585
C1645_754022
Ribosomal protein L1p/L10e family-domain-containing protein.
   
  
 0.583
Your Current Organism:
Glomus cerebriforme
NCBI taxonomy Id: 658196
Other names: ADW 16899, G. cerebriforme
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.