C1645_773103 protein (Glomus cerebriforme) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C1645_773103

CoA-transferase family III domain-containing protein. (445 aa)

Predicted Functional Partners:

C1645_765664

0.783

C1645_790269

0.733

C1645_721300

0.640

C1645_758621

0.640

C1645_840704

0.607

C1645_702622

0.607

C1645_692305

0.607

C1645_465519

0.585

C1645_728820

0.571

C1645_737275

0.569

Your Current Organism:

Glomus cerebriforme

NCBI taxonomy Id: 658196
Other names: ADW 16899, G. cerebriforme

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1645_465519	C1645_721300	A0A397SKN1	A0A397TCG5	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain-containing protein; Belongs to the TPP enzyme family.	0.798
C1645_465519	C1645_758621	A0A397SKN1	A0A397TJH7	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Acetolactate synthase.	0.796
C1645_465519	C1645_773103	A0A397SKN1	A0A397SSU6	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	CoA-transferase family III domain-containing protein.	0.585
C1645_692305	C1645_702622	A0A397TA70	A0A397S1P8	Sterol-binding-like protein.	Thiolase-like protein.	0.925
C1645_692305	C1645_721300	A0A397TA70	A0A397TCG5	Sterol-binding-like protein.	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain-containing protein; Belongs to the TPP enzyme family.	0.731
C1645_692305	C1645_728820	A0A397TA70	A0A397SFC2	Sterol-binding-like protein.	Alpha/Beta hydrolase protein.	0.702
C1645_692305	C1645_758621	A0A397TA70	A0A397TJH7	Sterol-binding-like protein.	Acetolactate synthase.	0.697
C1645_692305	C1645_765664	A0A397TA70	A0A397T776	Sterol-binding-like protein.	Glutaryl-coenzyme A dehydrogenase.	0.861
C1645_692305	C1645_773103	A0A397TA70	A0A397SSU6	Sterol-binding-like protein.	CoA-transferase family III domain-containing protein.	0.607
C1645_692305	C1645_790269	A0A397TA70	A0A397S687	Sterol-binding-like protein.	Putative short chain dehydrogenase.	0.862
C1645_692305	C1645_840704	A0A397TA70	A0A397RZ28	Sterol-binding-like protein.	Thiolase-like protein.	0.925
C1645_702622	C1645_692305	A0A397S1P8	A0A397TA70	Thiolase-like protein.	Sterol-binding-like protein.	0.925
C1645_702622	C1645_721300	A0A397S1P8	A0A397TCG5	Thiolase-like protein.	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain-containing protein; Belongs to the TPP enzyme family.	0.731
C1645_702622	C1645_728820	A0A397S1P8	A0A397SFC2	Thiolase-like protein.	Alpha/Beta hydrolase protein.	0.702
C1645_702622	C1645_758621	A0A397S1P8	A0A397TJH7	Thiolase-like protein.	Acetolactate synthase.	0.697
C1645_702622	C1645_765664	A0A397S1P8	A0A397T776	Thiolase-like protein.	Glutaryl-coenzyme A dehydrogenase.	0.861
C1645_702622	C1645_773103	A0A397S1P8	A0A397SSU6	Thiolase-like protein.	CoA-transferase family III domain-containing protein.	0.607
C1645_702622	C1645_790269	A0A397S1P8	A0A397S687	Thiolase-like protein.	Putative short chain dehydrogenase.	0.862
C1645_702622	C1645_840704	A0A397S1P8	A0A397RZ28	Thiolase-like protein.	Thiolase-like protein.	0.927
C1645_721300	C1645_465519	A0A397TCG5	A0A397SKN1	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain-containing protein; Belongs to the TPP enzyme family.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.798