Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C1645_770424Uncharacterized protein. (644 aa)    
Predicted Functional Partners:
C1645_801860
VPS9 domain-containing protein.
    
 0.971
C1645_828892
Ubiquitin-related domain-containing protein.
    
  0.903
C1645_833890
Putative VPS21-Rab5-like GTPase.
    
 0.786
C1645_833885
Alginate lyase-domain-containing protein.
    
 0.786
C1645_809240
Alginate lyase-domain-containing protein.
    
 0.786
C1645_780790
Alginate lyase-domain-containing protein.
    
 0.786
C1645_693406
Alginate lyase-domain-containing protein.
    
 0.786
C1645_735467
Ras protein.
    
 0.786
C1645_668849
Ubiquitin P37aP38A.
    
  0.782
C1645_697465
Ubiquitin.
    
  0.782
Your Current Organism:
Glomus cerebriforme
NCBI taxonomy Id: 658196
Other names: ADW 16899, G. cerebriforme
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