Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
C1645_162739P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family. (397 aa)    
Predicted Functional Partners:
C1645_234890
RRM domain-containing protein.
   
 0.966
C1645_753386
Translation initiation factor eIF 4e-like domain-containing protein; Belongs to the eukaryotic initiation factor 4E family.
   
 0.966
C1645_686527
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 0.965
PRT1
Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.
   
 
 0.953
C1645_776063
WD40-repeat-containing domain protein.
   
 
 0.946
C1645_824563
ATP-dependent RNA helicase FAL1; Belongs to the DEAD box helicase family.
   
  0.946
C1645_777772
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.945
TIF34
Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
   
 
 0.930
RPS1
40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.916
C1645_763879
40S ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.
   
 0.907
Your Current Organism:
Glomus cerebriforme
NCBI taxonomy Id: 658196
Other names: ADW 16899, G. cerebriforme
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