C1645_695506 protein (Glomus cerebriforme) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C1645_695506

Uncharacterized protein. (1202 aa)

Predicted Functional Partners:

C1645_776063

0.942

C1645_723568

0.904

C1645_797496

0.900

C1645_763879

0.852

C1645_764549

0.838

C1645_756309

0.821

C1645_729514

0.813

C1645_805491

0.789

C1645_686527

0.762

C1645_752639

0.753

Your Current Organism:

Glomus cerebriforme

NCBI taxonomy Id: 658196
Other names: ADW 16899, G. cerebriforme

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1645_686527	C1645_695506	A0A397TJX3	A0A397SW20	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Uncharacterized protein.	0.762
C1645_686527	C1645_729514	A0A397TJX3	A0A397SGC5	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Topoisomerase II-associated protein PAT1.	0.883
C1645_686527	C1645_752639	A0A397TJX3	A0A397TLI9	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.	0.969
C1645_686527	C1645_763879	A0A397TJX3	A0A397T356	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	40S ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	0.910
C1645_686527	C1645_776063	A0A397TJX3	A0A397SP48	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	WD40-repeat-containing domain protein.	0.774
C1645_695506	C1645_686527	A0A397SW20	A0A397TJX3	Uncharacterized protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.762
C1645_695506	C1645_723568	A0A397SW20	A0A397TBD2	Uncharacterized protein.	Uncharacterized protein.	0.904
C1645_695506	C1645_729514	A0A397SW20	A0A397SGC5	Uncharacterized protein.	Topoisomerase II-associated protein PAT1.	0.813
C1645_695506	C1645_752639	A0A397SW20	A0A397TLI9	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.	0.753
C1645_695506	C1645_756309	A0A397SW20	A0A397TEZ2	Uncharacterized protein.	Domain found in IF2B/IF5-domain-containing protein.	0.821
C1645_695506	C1645_763879	A0A397SW20	A0A397T356	Uncharacterized protein.	40S ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	0.852
C1645_695506	C1645_764549	A0A397SW20	A0A397TCK0	Uncharacterized protein.	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit WBP1; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the [...]	0.838
C1645_695506	C1645_776063	A0A397SW20	A0A397SP48	Uncharacterized protein.	WD40-repeat-containing domain protein.	0.942
C1645_695506	C1645_797496	A0A397SW20	A0A397SRZ9	Uncharacterized protein.	DnaJ domain-containing protein.	0.900
C1645_695506	C1645_805491	A0A397SW20	A0A397T1V2	Uncharacterized protein.	CS domain-containing protein.	0.789
C1645_723568	C1645_695506	A0A397TBD2	A0A397SW20	Uncharacterized protein.	Uncharacterized protein.	0.904
C1645_723568	C1645_756309	A0A397TBD2	A0A397TEZ2	Uncharacterized protein.	Domain found in IF2B/IF5-domain-containing protein.	0.662
C1645_723568	C1645_763879	A0A397TBD2	A0A397T356	Uncharacterized protein.	40S ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	0.986
C1645_723568	C1645_776063	A0A397TBD2	A0A397SP48	Uncharacterized protein.	WD40-repeat-containing domain protein.	0.969
C1645_729514	C1645_686527	A0A397SGC5	A0A397TJX3	Topoisomerase II-associated protein PAT1.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.883