Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C1645_773093RRM domain-containing protein. (263 aa)    
Predicted Functional Partners:
C1645_835748
Transcription factor/nuclear export subunit protein 2-domain-containing protein.
   
 0.982
C1645_840775
ATP-dependent RNA helicase uap56.
   
 0.977
C1645_791506
THO complex subunit 1 transcription elongation factor-domain-containing protein.
    
 0.976
C1645_776694
WD40-repeat-containing domain protein.
   
 0.976
C1645_824563
ATP-dependent RNA helicase FAL1; Belongs to the DEAD box helicase family.
   
 0.958
C1645_777474
MIF4G like-domain-containing protein.
    
 0.954
C1645_330738
Fms-interacting protein.
   
 0.948
C1645_843308
Uncharacterized protein.
   
 0.946
C1645_813849
Tho complex subunit 7-domain-containing protein.
   
 0.941
C1645_738639
Nuclear cap-binding protein subunit 2.
    
 0.940
Your Current Organism:
Glomus cerebriforme
NCBI taxonomy Id: 658196
Other names: ADW 16899, G. cerebriforme
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