STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C1645_693755Single-stranded nucleic acid binding R3H. (79 aa)    
Predicted Functional Partners:
C1645_693294
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.676
C1645_42554
RNA helicase-domain-containing protein.
    
 
 0.649
C1645_796724
Metalloenzyme, LuxS/M16 peptidase-like protein; Belongs to the peptidase M16 family.
    
   0.631
C1645_731146
Metalloenzyme, LuxS/M16 peptidase-like protein.
    
   0.630
C1645_752513
DNA-directed RNA polymerase.
    
 
 0.619
C1645_685801
Alpha/beta knot methyltransferase.
    
   0.453
Your Current Organism:
Glomus cerebriforme
NCBI taxonomy Id: 658196
Other names: ADW 16899, G. cerebriforme
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