C1645_770385 protein (Glomus cerebriforme) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C1645_770385

WD40-repeat-containing domain protein. (526 aa)

Predicted Functional Partners:

C1645_749640

0.838

C1645_247054

0.784

C1645_730747

0.784

C1645_752546

0.701

C1645_740476

0.675

C1645_821617

0.675

C1645_764952

0.675

C1645_819816

0.675

C1645_738371

0.642

C1645_763867

0.628

Your Current Organism:

Glomus cerebriforme

NCBI taxonomy Id: 658196
Other names: ADW 16899, G. cerebriforme

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1645_247054	C1645_738371	A0A397SQD5	A0A397SXS4	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	Kinase-like domain-containing protein.	0.893
C1645_247054	C1645_740476	A0A397SQD5	A0A397SLM7	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.894
C1645_247054	C1645_749640	A0A397SQD5	A0A397TKQ4	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	RING-type domain-containing protein.	0.985
C1645_247054	C1645_752546	A0A397SQD5	A0A397TGD0	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	HECT domain-containing protein.	0.547
C1645_247054	C1645_763867	A0A397SQD5	A0A397T3T9	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	Ubiquitin-conjugating enzyme E2 7; Belongs to the ubiquitin-conjugating enzyme family.	0.848
C1645_247054	C1645_764952	A0A397SQD5	A0A397T2D9	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	Cullin; Belongs to the cullin family.	0.894
C1645_247054	C1645_770385	A0A397SQD5	A0A397SW87	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	WD40-repeat-containing domain protein.	0.784
C1645_247054	C1645_819816	A0A397SQD5	A0A397TA19	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	Cullin-domain-containing protein; Belongs to the cullin family.	0.901
C1645_247054	C1645_821617	A0A397SQD5	A0A397SZZ1	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	Cullin domain-containing protein; Belongs to the cullin family.	0.888
C1645_730747	C1645_738371	A0A397TWX6	A0A397SXS4	Skp1 family, dimerization domain-containing protein; Belongs to the SKP1 family.	Kinase-like domain-containing protein.	0.893
C1645_730747	C1645_740476	A0A397TWX6	A0A397SLM7	Skp1 family, dimerization domain-containing protein; Belongs to the SKP1 family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.894
C1645_730747	C1645_749640	A0A397TWX6	A0A397TKQ4	Skp1 family, dimerization domain-containing protein; Belongs to the SKP1 family.	RING-type domain-containing protein.	0.985
C1645_730747	C1645_752546	A0A397TWX6	A0A397TGD0	Skp1 family, dimerization domain-containing protein; Belongs to the SKP1 family.	HECT domain-containing protein.	0.547
C1645_730747	C1645_763867	A0A397TWX6	A0A397T3T9	Skp1 family, dimerization domain-containing protein; Belongs to the SKP1 family.	Ubiquitin-conjugating enzyme E2 7; Belongs to the ubiquitin-conjugating enzyme family.	0.848
C1645_730747	C1645_764952	A0A397TWX6	A0A397T2D9	Skp1 family, dimerization domain-containing protein; Belongs to the SKP1 family.	Cullin; Belongs to the cullin family.	0.894
C1645_730747	C1645_770385	A0A397TWX6	A0A397SW87	Skp1 family, dimerization domain-containing protein; Belongs to the SKP1 family.	WD40-repeat-containing domain protein.	0.784
C1645_730747	C1645_819816	A0A397TWX6	A0A397TA19	Skp1 family, dimerization domain-containing protein; Belongs to the SKP1 family.	Cullin-domain-containing protein; Belongs to the cullin family.	0.901
C1645_730747	C1645_821617	A0A397TWX6	A0A397SZZ1	Skp1 family, dimerization domain-containing protein; Belongs to the SKP1 family.	Cullin domain-containing protein; Belongs to the cullin family.	0.888
C1645_738371	C1645_247054	A0A397SXS4	A0A397SQD5	Kinase-like domain-containing protein.	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	0.893
C1645_738371	C1645_730747	A0A397SXS4	A0A397TWX6	Kinase-like domain-containing protein.	Skp1 family, dimerization domain-containing protein; Belongs to the SKP1 family.	0.893