Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C1645_739451Uncharacterized protein. (460 aa)    
Predicted Functional Partners:
C1645_125565
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.939
C1645_776063
WD40-repeat-containing domain protein.
   
 
 0.845
C1645_42554
RNA helicase-domain-containing protein.
    
 0.838
C1645_53295
Pumilio1 in complex with Cyclinb reverse Rna.
   
 
 0.822
C1645_47444
P-loop containing nucleoside triphosphate hydrolase protein.
    
   0.812
C1645_769524
Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner.
   
   0.786
C1645_755905
LsmAD domain-containing protein.
   
 
 0.786
C1645_811881
USP domain-containing protein.
   
 
 0.786
C1645_745565
Armadillo-type protein.
     
 0.769
C1645_873043
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.756
Your Current Organism:
Glomus cerebriforme
NCBI taxonomy Id: 658196
Other names: ADW 16899, G. cerebriforme
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