STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C1645_739451Uncharacterized protein. (460 aa)    
Predicted Functional Partners:
C1645_125565
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.959
C1645_811881
USP domain-containing protein.
   
 
 0.804
C1645_42554
RNA helicase-domain-containing protein.
    
 0.717
C1645_735176
Uncharacterized protein.
    
   0.687
C1645_776269
Mago nashi protein.
    
  0.679
C1645_755905
LsmAD domain-containing protein.
   
 
 0.551
C1645_776063
WD40-repeat-containing domain protein.
   
 
 0.523
C1645_53295
Pumilio1 in complex with Cyclinb reverse Rna.
   
 
 0.498
PRT1
Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.
   
 
 0.484
C1645_215604
P-loop containing nucleoside triphosphate hydrolase protein.
   
   0.467
Your Current Organism:
Glomus cerebriforme
NCBI taxonomy Id: 658196
Other names: ADW 16899, G. cerebriforme
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