STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ84957.1Transcriptional regulator, MarR family. (170 aa)    
Predicted Functional Partners:
SEA20291.1
4-hydroxyphenylpyruvate dioxygenase.
 
    0.615
SDZ85001.1
Maleylacetoacetate isomerase.
 
     0.609
SDZ84842.1
Indolepyruvate ferredoxin oxidoreductase.
  
    0.527
SDZ86650.1
Indolepyruvate ferredoxin oxidoreductase.
  
    0.525
SDZ84968.1
Homogentisate 1,2-dioxygenase.
       0.490
SDZ84983.1
Fumarylacetoacetate (FAA) hydrolase.
 
     0.486
SDZ84938.1
Aspartate aminotransferase.
       0.485
SEA13250.1
Na+/proline symporter.
 
  
 0.449
SEA33605.1
Glucose / Sorbosone dehydrogenase.
   
 
  0.444
parC
DNA topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.
   
  
 0.433
Your Current Organism:
Microbulbifer marinus
NCBI taxonomy Id: 658218
Other names: CGMCC 1.10657, JCM 17211, Microbulbifer marinus Zhang et al. 2012, Microbulbifer sp. Y215, strain Y215
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