Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDZ86409.1 | SDZ88238.1 | SAMN05216562_0851 | SAMN05216562_0977 | Chorismate mutase. | L-threonine synthase. | 0.567 |
SDZ86409.1 | SEA10272.1 | SAMN05216562_0851 | SAMN05216562_1732 | Chorismate mutase. | HAD-superfamily subfamily IB hydrolase, TIGR01490. | 0.443 |
SDZ86409.1 | SEA14302.1 | SAMN05216562_0851 | SAMN05216562_1948 | Chorismate mutase. | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.436 |
SDZ86409.1 | aroA | SAMN05216562_0851 | SAMN05216562_0850 | Chorismate mutase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.999 |
SDZ86409.1 | serC | SAMN05216562_0851 | SAMN05216562_0852 | Chorismate mutase. | Phosphoserine aminotransferase apoenzyme; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.978 |
SDZ88238.1 | SDZ86409.1 | SAMN05216562_0977 | SAMN05216562_0851 | L-threonine synthase. | Chorismate mutase. | 0.567 |
SDZ88238.1 | SEA10272.1 | SAMN05216562_0977 | SAMN05216562_1732 | L-threonine synthase. | HAD-superfamily subfamily IB hydrolase, TIGR01490. | 0.430 |
SDZ88238.1 | SEA12160.1 | SAMN05216562_0977 | SAMN05216562_1833 | L-threonine synthase. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.510 |
SDZ88238.1 | SEA14302.1 | SAMN05216562_0977 | SAMN05216562_1948 | L-threonine synthase. | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.479 |
SDZ88238.1 | SEA42499.1 | SAMN05216562_0977 | SAMN05216562_3069 | L-threonine synthase. | Phosphoserine phosphatase. | 0.490 |
SDZ88238.1 | aroA | SAMN05216562_0977 | SAMN05216562_0850 | L-threonine synthase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.509 |
SDZ88238.1 | pdxA | SAMN05216562_0977 | SAMN05216562_2974 | L-threonine synthase. | 4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP). | 0.940 |
SDZ88238.1 | pdxB | SAMN05216562_0977 | SAMN05216562_0071 | L-threonine synthase. | 4-phosphoerythronate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate. | 0.509 |
SDZ88238.1 | serC | SAMN05216562_0977 | SAMN05216562_0852 | L-threonine synthase. | Phosphoserine aminotransferase apoenzyme; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.963 |
SEA10272.1 | SDZ86409.1 | SAMN05216562_1732 | SAMN05216562_0851 | HAD-superfamily subfamily IB hydrolase, TIGR01490. | Chorismate mutase. | 0.443 |
SEA10272.1 | SDZ88238.1 | SAMN05216562_1732 | SAMN05216562_0977 | HAD-superfamily subfamily IB hydrolase, TIGR01490. | L-threonine synthase. | 0.430 |
SEA10272.1 | SEA42499.1 | SAMN05216562_1732 | SAMN05216562_3069 | HAD-superfamily subfamily IB hydrolase, TIGR01490. | Phosphoserine phosphatase. | 0.466 |
SEA10272.1 | serC | SAMN05216562_1732 | SAMN05216562_0852 | HAD-superfamily subfamily IB hydrolase, TIGR01490. | Phosphoserine aminotransferase apoenzyme; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.755 |
SEA12160.1 | SDZ88238.1 | SAMN05216562_1833 | SAMN05216562_0977 | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | L-threonine synthase. | 0.510 |
SEA12160.1 | SEA14302.1 | SAMN05216562_1833 | SAMN05216562_1948 | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.458 |
page 1 of 4