STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ95547.1NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family. (184 aa)    
Predicted Functional Partners:
SDZ95522.1
rubredoxin-NAD+ reductase; Belongs to the FAD-dependent oxidoreductase family.
     
 0.676
SDZ80643.1
Transcriptional regulator, IclR family.
 
  
  0.607
SDZ80093.1
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
    
 0.578
SDZ81163.1
NAD(P)H-flavin reductase.
  
 
  0.539
SEA42117.1
Nitroreductase.
  
 
 0.537
SEA18306.1
Arsenical resistance protein ArsH.
    
 0.535
SEA30203.1
Nitrate/nitrite transport system ATP-binding protein.
  
 
 0.513
SEA50150.1
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
  
  
  0.511
SEA30194.1
Nitrate/nitrite transport system permease protein.
  
 
  0.499
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
  
 0.492
Your Current Organism:
Microbulbifer marinus
NCBI taxonomy Id: 658218
Other names: CGMCC 1.10657, JCM 17211, Microbulbifer marinus Zhang et al. 2012, Microbulbifer sp. Y215, strain Y215
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