Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA08920.1Protein of unknown function. (275 aa)    
Predicted Functional Partners:
SDZ88223.1
Exonuclease RecJ.
    
   0.768
SEA09989.1
Tetratricopeptide repeat-containing protein.
  
     0.703
SEA10007.1
Outer membrane transport energization protein TonB.
  
     0.642
SEA35000.1
Tetratricopeptide repeat-containing protein.
  
     0.599
SEA12430.1
Protein of unknown function.
  
     0.580
SEA10074.1
Protein of unknown function.
  
     0.576
SEA09969.1
Outer membrane transport energization protein TonB.
  
     0.573
SEA10057.1
Outer membrane transport energization protein ExbB.
  
     0.562
SDZ80070.1
TonB-dependent receptor.
  
     0.557
SEA08901.1
Predicted hydrolase of the alpha/beta superfamily.
       0.554
Your Current Organism:
Microbulbifer marinus
NCBI taxonomy Id: 658218
Other names: CGMCC 1.10657, JCM 17211, Microbulbifer marinus Zhang et al. 2012, Microbulbifer sp. Y215, strain Y215
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