STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA09989.1Tetratricopeptide repeat-containing protein. (449 aa)    
Predicted Functional Partners:
SEA10007.1
Outer membrane transport energization protein TonB.
 
 
   0.949
SEA10026.1
Outer membrane transport energization protein ExbD.
 
 
   0.932
SEA10074.1
Protein of unknown function.
 
   0.908
SEA10057.1
Outer membrane transport energization protein ExbB.
 
     0.901
SEA10045.1
Outer membrane transport energization protein ExbB.
 
     0.891
SEA09969.1
Outer membrane transport energization protein TonB.
 
 
   0.880
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.873
htpG
Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity.
   
 0.860
SEA40636.1
Diguanylate cyclase (GGDEF) domain-containing protein.
    
 0.854
SDZ91501.1
Protein of unknown function.
 
 0.850
Your Current Organism:
Microbulbifer marinus
NCBI taxonomy Id: 658218
Other names: CGMCC 1.10657, JCM 17211, Microbulbifer marinus Zhang et al. 2012, Microbulbifer sp. Y215, strain Y215
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.