STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA14629.1PAS/PAC sensor signal transduction histidine kinase. (354 aa)    
Predicted Functional Partners:
ntrC
Nitrogen metabolism transcriptional regulator, NtrC, Fis family; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.
 0.998
SEA13250.1
Na+/proline symporter.
 
 0.944
SEA42309.1
Response regulator receiver domain-containing protein.
 
 
 0.939
SEA32941.1
Signal transduction histidine kinase.
 
 
0.938
SEA21349.1
Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family.
  
 0.899
SEA21388.1
Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family.
  
 0.899
SDZ97175.1
Two-component response regulator CbrB.
 0.875
SEA47812.1
Two-component system, NtrC family, response regulator PilR.
 0.875
SEA35437.1
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains.
 0.841
SEA40636.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.780
Your Current Organism:
Microbulbifer marinus
NCBI taxonomy Id: 658218
Other names: CGMCC 1.10657, JCM 17211, Microbulbifer marinus Zhang et al. 2012, Microbulbifer sp. Y215, strain Y215
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