Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEA34643.1 | SEA34658.1 | SAMN05216562_2748 | SAMN05216562_2749 | Hypothetical protein. | Hypothetical protein; Belongs to the UPF0260 family. | 0.747 |
SEA34643.1 | SEA34678.1 | SAMN05216562_2748 | SAMN05216562_2750 | Hypothetical protein. | Hypothetical protein. | 0.736 |
SEA34643.1 | SEA34729.1 | SAMN05216562_2748 | SAMN05216562_2753 | Hypothetical protein. | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.643 |
SEA34643.1 | dnaX | SAMN05216562_2748 | SAMN05216562_2754 | Hypothetical protein. | DNA polymerase III, gamma subunit /DNA polymerase III, tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.497 |
SEA34643.1 | recR | SAMN05216562_2748 | SAMN05216562_2752 | Hypothetical protein. | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.736 |
SEA34643.1 | rnd | SAMN05216562_2748 | SAMN05216562_2751 | Hypothetical protein. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.736 |
SEA34658.1 | SEA34643.1 | SAMN05216562_2749 | SAMN05216562_2748 | Hypothetical protein; Belongs to the UPF0260 family. | Hypothetical protein. | 0.747 |
SEA34658.1 | SEA34678.1 | SAMN05216562_2749 | SAMN05216562_2750 | Hypothetical protein; Belongs to the UPF0260 family. | Hypothetical protein. | 0.848 |
SEA34658.1 | SEA34729.1 | SAMN05216562_2749 | SAMN05216562_2753 | Hypothetical protein; Belongs to the UPF0260 family. | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.746 |
SEA34658.1 | dnaX | SAMN05216562_2749 | SAMN05216562_2754 | Hypothetical protein; Belongs to the UPF0260 family. | DNA polymerase III, gamma subunit /DNA polymerase III, tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.625 |
SEA34658.1 | recR | SAMN05216562_2749 | SAMN05216562_2752 | Hypothetical protein; Belongs to the UPF0260 family. | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.841 |
SEA34658.1 | rnd | SAMN05216562_2749 | SAMN05216562_2751 | Hypothetical protein; Belongs to the UPF0260 family. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.852 |
SEA34678.1 | SEA34643.1 | SAMN05216562_2750 | SAMN05216562_2748 | Hypothetical protein. | Hypothetical protein. | 0.736 |
SEA34678.1 | SEA34658.1 | SAMN05216562_2750 | SAMN05216562_2749 | Hypothetical protein. | Hypothetical protein; Belongs to the UPF0260 family. | 0.848 |
SEA34678.1 | SEA34729.1 | SAMN05216562_2750 | SAMN05216562_2753 | Hypothetical protein. | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.757 |
SEA34678.1 | dnaX | SAMN05216562_2750 | SAMN05216562_2754 | Hypothetical protein. | DNA polymerase III, gamma subunit /DNA polymerase III, tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.639 |
SEA34678.1 | recR | SAMN05216562_2750 | SAMN05216562_2752 | Hypothetical protein. | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.830 |
SEA34678.1 | rnd | SAMN05216562_2750 | SAMN05216562_2751 | Hypothetical protein. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.919 |
SEA34729.1 | SEA34643.1 | SAMN05216562_2753 | SAMN05216562_2748 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Hypothetical protein. | 0.643 |
SEA34729.1 | SEA34658.1 | SAMN05216562_2753 | SAMN05216562_2749 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Hypothetical protein; Belongs to the UPF0260 family. | 0.746 |
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