STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK12010.1RNA polymerase sigma-70 factor, ECF subfamily. (211 aa)    
Predicted Functional Partners:
SDK11982.1
anti-ECFsigma factor, ChrR.
 
 
 0.980
SDJ56600.1
Anti sigma-E protein, RseA.
  
 
 0.910
SDK56226.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.730
SDK56073.1
RNA polymerase sigma-70 factor, ECF subfamily; Manually curated; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.700
SDJ67944.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.606
SDJ59609.1
Putative zinc-finger.
  
 
 0.604
SDK12041.1
SnoaL-like domain-containing protein.
       0.559
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.555
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.552
SDK12133.1
Hypothetical protein.
 
     0.546
Your Current Organism:
Microbulbifer yueqingensis
NCBI taxonomy Id: 658219
Other names: CGMCC 1.10658, JCM 17212, M. yueqingensis, Microbulbifer sp. Y226, Microbulbifer yueqingensis Zhang et al. 2012, strain Y226
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.