STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK17833.1Putative protease. (440 aa)    
Predicted Functional Partners:
SDJ90464.1
Collagenase-like protease, PrtC family.
 
 
 0.822
SDJ53778.1
Methyltransferase domain-containing protein.
  
  
 0.602
SDJ90531.1
Predicted lipid carrier protein YhbT, contains SCP2 domain.
 
  
 0.534
SDJ95920.1
Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.457
SDK17796.1
NADPH:quinone reductase.
       0.457
SDK17865.1
Uncharacterized hydrophobic domain-containing protein.
       0.457
Your Current Organism:
Microbulbifer yueqingensis
NCBI taxonomy Id: 658219
Other names: CGMCC 1.10658, JCM 17212, M. yueqingensis, Microbulbifer sp. Y226, Microbulbifer yueqingensis Zhang et al. 2012, strain Y226
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.