Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDJ64102.1 | SDK21098.1 | SAMN05216212_0521 | SAMN05216212_1822 | Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | Competence protein ComEC. | 0.830 |
SDJ64102.1 | SDK43549.1 | SAMN05216212_0521 | SAMN05216212_2385 | Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | DNA protecting protein DprA. | 0.781 |
SDJ64869.1 | SDK43549.1 | SAMN05216212_0549 | SAMN05216212_2385 | Putative endonuclease; Belongs to the UPF0102 family. | DNA protecting protein DprA. | 0.584 |
SDJ64869.1 | SDK53219.1 | SAMN05216212_0549 | SAMN05216212_2573 | Putative endonuclease; Belongs to the UPF0102 family. | comF family protein. | 0.671 |
SDJ64869.1 | SDK74932.1 | SAMN05216212_0549 | SAMN05216212_3104 | Putative endonuclease; Belongs to the UPF0102 family. | Magnesium chelatase family protein. | 0.767 |
SDK21098.1 | SDJ64102.1 | SAMN05216212_1822 | SAMN05216212_0521 | Competence protein ComEC. | Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.830 |
SDK21098.1 | SDK43549.1 | SAMN05216212_1822 | SAMN05216212_2385 | Competence protein ComEC. | DNA protecting protein DprA. | 0.879 |
SDK21098.1 | SDK53219.1 | SAMN05216212_1822 | SAMN05216212_2573 | Competence protein ComEC. | comF family protein. | 0.858 |
SDK21098.1 | SDK74932.1 | SAMN05216212_1822 | SAMN05216212_3104 | Competence protein ComEC. | Magnesium chelatase family protein. | 0.617 |
SDK21098.1 | SDK79474.1 | SAMN05216212_1822 | SAMN05216212_3231 | Competence protein ComEC. | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.494 |
SDK21098.1 | recA | SAMN05216212_1822 | SAMN05216212_3058 | Competence protein ComEC. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.575 |
SDK21098.1 | recG | SAMN05216212_1822 | SAMN05216212_2289 | Competence protein ComEC. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.537 |
SDK43513.1 | SDK43549.1 | SAMN05216212_2384 | SAMN05216212_2385 | LysM domain-containing protein. | DNA protecting protein DprA. | 0.665 |
SDK43549.1 | SDJ64102.1 | SAMN05216212_2385 | SAMN05216212_0521 | DNA protecting protein DprA. | Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.781 |
SDK43549.1 | SDJ64869.1 | SAMN05216212_2385 | SAMN05216212_0549 | DNA protecting protein DprA. | Putative endonuclease; Belongs to the UPF0102 family. | 0.584 |
SDK43549.1 | SDK21098.1 | SAMN05216212_2385 | SAMN05216212_1822 | DNA protecting protein DprA. | Competence protein ComEC. | 0.879 |
SDK43549.1 | SDK43513.1 | SAMN05216212_2385 | SAMN05216212_2384 | DNA protecting protein DprA. | LysM domain-containing protein. | 0.665 |
SDK43549.1 | SDK53219.1 | SAMN05216212_2385 | SAMN05216212_2573 | DNA protecting protein DprA. | comF family protein. | 0.894 |
SDK43549.1 | SDK74932.1 | SAMN05216212_2385 | SAMN05216212_3104 | DNA protecting protein DprA. | Magnesium chelatase family protein. | 0.853 |
SDK43549.1 | SDK79474.1 | SAMN05216212_2385 | SAMN05216212_3231 | DNA protecting protein DprA. | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.631 |
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