GMDG_07935 protein (Pseudogymnoascus destructans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GMDG_07935

Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (314 aa)

Predicted Functional Partners:

GMDG_05192

0.784

GMDG_04914

0.775

GMDG_00102

0.757

GMDG_06892

0.652

GMDG_01094

0.638

GMDG_01102

0.635

GMDG_07512

0.609

GMDG_07195

0.588

GMDG_02621

0.564

GMDG_08988

0.559

Your Current Organism:

Pseudogymnoascus destructans

NCBI taxonomy Id: 658429
Other names: Geomyces destructans 20631-21, P. destructans 20631-21, Pseudogymnoascus destructans 20631-21

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GMDG_00102	GMDG_01094	L8FPV4	L8FPX1	Uncharacterized protein.	Uncharacterized protein.	0.999
GMDG_00102	GMDG_01102	L8FPV4	L8FPH1	Uncharacterized protein.	ADP,ATP carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.760
GMDG_00102	GMDG_02621	L8FPV4	L8G2Q4	Uncharacterized protein.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.588
GMDG_00102	GMDG_04914	L8FPV4	L8GC67	Uncharacterized protein.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
GMDG_00102	GMDG_05192	L8FPV4	L8FM71	Uncharacterized protein.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.951
GMDG_00102	GMDG_06892	L8FPV4	L8FUJ5	Uncharacterized protein.	Uncharacterized protein.	0.957
GMDG_00102	GMDG_07195	L8FPV4	L8FXD2	Uncharacterized protein.	ATP synthase F1, delta subunit.	0.975
GMDG_00102	GMDG_07512	L8FPV4	L8FYQ2	Uncharacterized protein.	Mitochondrial outer membrane protein porin.	0.584
GMDG_00102	GMDG_07935	L8FPV4	L8G0N5	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.757
GMDG_00102	GMDG_08988	L8FPV4	L8FUM0	Uncharacterized protein.	ATP-synt_ab domain-containing protein.	0.831
GMDG_01094	GMDG_00102	L8FPX1	L8FPV4	Uncharacterized protein.	Uncharacterized protein.	0.999
GMDG_01094	GMDG_01102	L8FPX1	L8FPH1	Uncharacterized protein.	ADP,ATP carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.625
GMDG_01094	GMDG_04914	L8FPX1	L8GC67	Uncharacterized protein.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
GMDG_01094	GMDG_05192	L8FPX1	L8FM71	Uncharacterized protein.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.960
GMDG_01094	GMDG_06892	L8FPX1	L8FUJ5	Uncharacterized protein.	Uncharacterized protein.	0.964
GMDG_01094	GMDG_07195	L8FPX1	L8FXD2	Uncharacterized protein.	ATP synthase F1, delta subunit.	0.965
GMDG_01094	GMDG_07512	L8FPX1	L8FYQ2	Uncharacterized protein.	Mitochondrial outer membrane protein porin.	0.541
GMDG_01094	GMDG_07935	L8FPX1	L8G0N5	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.638
GMDG_01094	GMDG_08988	L8FPX1	L8FUM0	Uncharacterized protein.	ATP-synt_ab domain-containing protein.	0.757
GMDG_01102	GMDG_00102	L8FPH1	L8FPV4	ADP,ATP carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.760