GMDG_08378 protein (Pseudogymnoascus destructans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GMDG_08378

Uncharacterized protein. (214 aa)

Predicted Functional Partners:

GMDG_01688

0.636

GMDG_08434

0.626

GMDG_01206

0.620

GMDG_01094

0.616

GMDG_03483

0.597

GMDG_07569

0.595

GMDG_03043

0.595

GMDG_05082

0.538

GMDG_05781

0.538

GMDG_04247

0.538

Your Current Organism:

Pseudogymnoascus destructans

NCBI taxonomy Id: 658429
Other names: Geomyces destructans 20631-21, P. destructans 20631-21, Pseudogymnoascus destructans 20631-21

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GMDG_01094	GMDG_01206	L8FPX1	L8FRX7	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome c oxidase subunit 6A family.	0.999
GMDG_01094	GMDG_01688	L8FPX1	L8FWC6	Uncharacterized protein.	Uncharacterized protein.	0.999
GMDG_01094	GMDG_03043	L8FPX1	L8G8A3	Uncharacterized protein.	Uncharacterized protein.	0.996
GMDG_01094	GMDG_03483	L8FPX1	L8G6R7	Uncharacterized protein.	Cytochrome c oxidase subunit IV.	0.999
GMDG_01094	GMDG_04247	L8FPX1	L8GAT9	Uncharacterized protein.	Uncharacterized protein.	0.869
GMDG_01094	GMDG_05082	L8FPX1	L8FLW3	Uncharacterized protein.	BZIP domain-containing protein.	0.869
GMDG_01094	GMDG_05781	L8FPX1	L8FQV1	Uncharacterized protein.	Uncharacterized protein.	0.993
GMDG_01094	GMDG_07569	L8FPX1	L8G1A6	Uncharacterized protein.	Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.	0.999
GMDG_01094	GMDG_08378	L8FPX1	L8G3W7	Uncharacterized protein.	Uncharacterized protein.	0.616
GMDG_01094	GMDG_08434	L8FPX1	L8G2H4	Uncharacterized protein.	Uncharacterized protein.	0.999
GMDG_01206	GMDG_01094	L8FRX7	L8FPX1	Uncharacterized protein; Belongs to the cytochrome c oxidase subunit 6A family.	Uncharacterized protein.	0.999
GMDG_01206	GMDG_01688	L8FRX7	L8FWC6	Uncharacterized protein; Belongs to the cytochrome c oxidase subunit 6A family.	Uncharacterized protein.	0.999
GMDG_01206	GMDG_03043	L8FRX7	L8G8A3	Uncharacterized protein; Belongs to the cytochrome c oxidase subunit 6A family.	Uncharacterized protein.	0.992
GMDG_01206	GMDG_03483	L8FRX7	L8G6R7	Uncharacterized protein; Belongs to the cytochrome c oxidase subunit 6A family.	Cytochrome c oxidase subunit IV.	0.999
GMDG_01206	GMDG_04247	L8FRX7	L8GAT9	Uncharacterized protein; Belongs to the cytochrome c oxidase subunit 6A family.	Uncharacterized protein.	0.850
GMDG_01206	GMDG_05082	L8FRX7	L8FLW3	Uncharacterized protein; Belongs to the cytochrome c oxidase subunit 6A family.	BZIP domain-containing protein.	0.850
GMDG_01206	GMDG_05781	L8FRX7	L8FQV1	Uncharacterized protein; Belongs to the cytochrome c oxidase subunit 6A family.	Uncharacterized protein.	0.982
GMDG_01206	GMDG_07569	L8FRX7	L8G1A6	Uncharacterized protein; Belongs to the cytochrome c oxidase subunit 6A family.	Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.	0.999
GMDG_01206	GMDG_08378	L8FRX7	L8G3W7	Uncharacterized protein; Belongs to the cytochrome c oxidase subunit 6A family.	Uncharacterized protein.	0.620
GMDG_01206	GMDG_08434	L8FRX7	L8G2H4	Uncharacterized protein; Belongs to the cytochrome c oxidase subunit 6A family.	Uncharacterized protein.	0.998