STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR05347.1Hypothetical protein; COG0697. (304 aa)    
Predicted Functional Partners:
AJR06702.1
ParB family protein; COG1475; Belongs to the ParB family.
  
     0.761
AJR05370.1
Deca-heme c-type cytochrome.
  
     0.754
AJR05372.1
Hypothetical protein.
  
    0.740
AJR08374.1
Putative outer membrane protein precursor.
  
    0.737
AJR05436.1
Exopolygalacturonate lyase.
  
     0.712
AJR09218.1
Hypothetical protein.
  
     0.712
AJR06693.1
Transcriptional regulator; COG2202,COG2771.
  
     0.696
AJR09191.1
Putative recombinase; COG1961.
  
    0.695
AJR08372.1
Putative deCa-heme c-type cytochrome.
  
     0.692
AJR06841.1
Hypothetical protein; COG0330.
  
     0.690
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.