STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR05589.1Putative PTS system, EIIC component; COG3641. (353 aa)    
Predicted Functional Partners:
AJR08227.1
Putative diaminobutyrate-pyruvate transaminase & L-2,4-diaminobutyrate decarboxylase; COG0076.
   
    0.589
AJR08547.1
4-aminobutyrate aminotransferase; COG0160; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
    0.589
AJR05590.1
Hypothetical protein.
       0.491
AJR07104.1
Hypothetical protein; COG3314.
  
     0.439
AJR05588.1
Putative DNA ligase; COG1793.
       0.435
AJR09305.1
Nucleoside recognition domain-containing protein; COG3314.
  
     0.432
AJR06868.1
Hypothetical protein; COG3924.
  
     0.411
AJR05591.1
Hypothetical protein; COG0665,COG4121.
       0.404
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.