STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR05683.1Hypothetical protein. (265 aa)    
Predicted Functional Partners:
AJR05685.1
Putative RND efflux transporter; COG1033.
  
 0.900
AJR05684.1
Hypothetical protein.
 
     0.808
AJR06545.1
Putative RND efflux transporter; COG1033.
  
 0.799
AJR06825.1
Putative N-acetylmuramoyl-L-alanine amidase; COG0860,COG1388.
    
   0.743
AJR09236.1
Hypothetical protein; COG4591.
 
 
 
 0.730
AJR05564.1
Putative lipoprotein; COG4238.
    
 
 0.726
AJR06002.1
Putative lipoprotein; COG4238.
    
 
 0.726
AJR09235.1
Hypothetical protein; COG4591.
 
 
 
 0.716
AJR06547.1
Hypothetical protein.
 
    0.715
AJR05682.1
Putative major facilitator transporter; COG0477.
       0.620
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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