STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR05948.1Hypothetical protein; COG1683,COG3272. (315 aa)    
Predicted Functional Partners:
AJR05946.1
Deoxyribodipyrimidine photolyase; COG0415; Belongs to the DNA photolyase family.
  
  
 0.975
AJR05947.1
Putative MerR family transcriptional regulator; COG0789.
  
  
 0.909
AJR05303.1
Deoxyribodipyrimidine photolyase; COG0415; Belongs to the DNA photolyase family.
  
  
 0.896
AJR05941.1
Cyclopropane-fatty-acyl-phospholipid synthase; COG2230.
     
 0.788
AJR05945.1
Putative transcriptional regulator.
 
  
 0.763
AJR05942.1
Hypothetical protein; COG3496.
       0.703
AJR05943.1
Hypothetical protein; COG2907.
       0.703
AJR05944.1
Putative short-chain dehydrogenase; COG1028.
       0.682
AJR05939.1
Hypothetical protein.
     
 0.618
thiI
Thiamine biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
 
     0.599
Your Current Organism:
Photobacterium gaetbulicola
NCBI taxonomy Id: 658445
Other names: P. gaetbulicola Gung47, Photobacterium gaetbulicola Gung47, Photobacterium sp. Gung47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.